We provide a collection of example notebooks to get a better idea of how to use pyPESTO, and illustrate core features.

The notebooks can be run locally with an installation of jupyter (pip install jupyter), or online on Google Colab or nbviewer, following the links at the top of each notebook. At least an installation of pyPESTO is required, which can be performed by

# install if not done yet
!pip install pypesto --quiet

Potentially, further dependencies may be required.

Getting started

PEtab and AMICI

Algorithms and features

Application examples