Welcome to pyPESTO’s documentation!

Version: 0.2.5

Source code: https://github.com/icb-dcm/pypesto

User's guide

• Install and upgrade
  • Requirements
  • Install from PIP
  • Install from GIT
  • Upgrade
  • Install optional packages
• Examples
  • Rosenbrock banana
  • Conversion reaction
  • Fixed parameters
  • AMICI Python example “Boehm”
  • Model import using the Petab format
  • Storage
  • A sampler study
  • MCMC sampling diagnostics
  • Optimization with Synthetic Data
  • Standard Optimization
  • Synthetic Optimization
  • Definition of Priors:
  • Save and load results as HDF5 files
  • Download the examples as notebooks
• Storage
  • pyPESTO Problem
  • Parameter estimation
  • Sampling
  • Profiling
• API reference
  • pyPESTO
  • Objective
  • Problem
  • Prediction
  • PEtab
  • Optimize
  • Profile
  • Sample
  • Result
  • Visualize
  • Engines
  • Startpoint
  • Storage
  • Logging
  • Ensemble

Developer's guide

• Contribute
  • Workflow
  • Environment
  • GitHub Actions
  • Documentation
  • Unit tests
  • PEP8
• Deploy
  • Versions
  • Create a new release
  • Upload to PyPI

About

• Release notes
  • 0.2 series
  • 0.1 series
  • 0.0 series
• Authors
• Contact
• License
• Logo

Indices and tables

• Index

• Module Index

• Search Page