Release notes

0.0 series

0.0.8 (2019-09-01)

• Add logo (#178).
• Fix petab API changes (#179).
• Some minor bugfixes (#168).

0.0.7 (2019-03-21)

• Support noise models in Petab and Amici.
• Minor Petab update bug fixes.

0.0.6 (2019-03-13)

• Several minor error fixes, in particular on tests and steady state.

0.0.5 (2019-03-11)

• Introduce AggregatedObjective to use multiple objectives at once.
• Estimate steady state in AmiciObjective.
• Check amici model build version in PetabImporter.
• Use Amici multithreading in AmiciObjective.
• Allow to sort multistarts by initial value.
• Show usage of visualization routines in notebooks.
• Various fixes, in particular to visualization.

0.0.4 (2019-02-25)

• Implement multi process parallelization engine for optimization.
• Introduce PrePostProcessor to more reliably handle pre- and post-processing.
• Fix problems with simulating for multiple conditions.
• Add more visualization routines and options for those (colors, reference points, plotting of lists of result obejcts)

0.0.3 (2019-01-30)

• Import amici models and the petab data format automatically using pypesto.PetabImporter.
• Basic profiling routines.

0.0.2 (2018-10-18)

• Fix parameter values
• Record trace of function values
• Amici objective to directly handle amici models

0.0.1 (2018-07-25)

• Basic framework and implementation of the optimization