pyPESTO
v0.0.13
User's guide
Install and upgrade
Examples
Developer's guide
Contribute
Deploy
API reference
Objective
Problem
PEtab
Optimize
Profile
Sampling
Visualize
Result
Engines
Startpoint
Logging
About
Release notes
Authors
Contact
License
Logo
pyPESTO
Docs
»
Index
Edit on GitHub
Index
_
|
A
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
X
_
__abstractmethods__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
__add__ (pypesto.problem.List attribute)
__args__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__call__() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
__class__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__contains__ (pypesto.problem.List attribute)
__contains__() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
__deepcopy__() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
__delattr__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__delitem__ (pypesto.objective.HistoryOptions attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.problem.List attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.visualize.ReferencePoint attribute)
__dict__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__dir__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable method)
(pypesto.problem.List method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__eq__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__extra__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__format__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable method)
(pypesto.problem.List method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__ge__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__getattr__() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
__getattribute__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__getitem__() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.problem.List method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
__getstate__() (pypesto.objective.AmiciObjective method)
__gt__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__hash__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__iadd__ (pypesto.problem.List attribute)
__imul__ (pypesto.problem.List attribute)
__init__ (pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__init__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__init_subclass__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable method)
(pypesto.problem.List method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__iter__ (pypesto.objective.HistoryOptions attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.problem.List attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.visualize.ReferencePoint attribute)
__iter__() (pypesto.problem.Iterable method)
(pypesto.result.Sequence method)
__le__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__len__ (pypesto.objective.HistoryOptions attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.problem.List attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.visualize.ReferencePoint attribute)
__len__() (pypesto.result.Sequence method)
__lt__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__module__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__mul__ (pypesto.problem.List attribute)
__ne__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__new__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable static method)
(pypesto.problem.List static method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence static method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__next_in_mro__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__orig_bases__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__origin__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__parameters__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__reduce__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable method)
(pypesto.problem.List method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__reduce_ex__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable method)
(pypesto.problem.List method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__repr__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__reversed__() (pypesto.problem.List method)
(pypesto.result.Sequence method)
__rmul__ (pypesto.problem.List attribute)
__setattr__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__setitem__ (pypesto.objective.HistoryOptions attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.problem.List attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.visualize.ReferencePoint attribute)
__setstate__() (pypesto.objective.AmiciObjective method)
__sizeof__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable method)
(pypesto.problem.List method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__slots__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__str__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.result.Sequence attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
__subclasshook__() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
(pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjectBuilder method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.Objective method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.OptimizerResult method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
(pypesto.petab.PetabImporter method)
(pypesto.problem.Iterable method)
(pypesto.problem.List method)
(pypesto.problem.Objective method)
(pypesto.problem.Problem method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.result.OptimizeResult method)
(pypesto.result.ProfileResult method)
(pypesto.result.Result method)
(pypesto.result.SampleResult method)
(pypesto.result.Sequence method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.McmcPtResult method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
(pypesto.visualize.ReferencePoint method)
__tree_hash__ (pypesto.problem.Iterable attribute)
(pypesto.problem.List attribute)
(pypesto.result.Sequence attribute)
__weakref__ (pypesto.engine.Engine attribute)
(pypesto.engine.MultiProcessEngine attribute)
(pypesto.engine.MultiThreadEngine attribute)
(pypesto.engine.OptimizerTask attribute)
(pypesto.engine.SingleCoreEngine attribute)
(pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciCalculator attribute)
(pypesto.objective.AmiciObjectBuilder attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.HistoryOptions attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.Objective attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.DlibOptimizer attribute)
(pypesto.optimize.OptimizeOptions attribute)
(pypesto.optimize.Optimizer attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.optimize.PyswarmOptimizer attribute)
(pypesto.optimize.ScipyOptimizer attribute)
(pypesto.petab.PetabImporter attribute)
(pypesto.problem.Objective attribute)
(pypesto.problem.Problem attribute)
(pypesto.profile.ProfileOptions attribute)
(pypesto.profile.ProfilerResult attribute)
(pypesto.result.OptimizeResult attribute)
(pypesto.result.ProfileResult attribute)
(pypesto.result.Result attribute)
(pypesto.result.SampleResult attribute)
(pypesto.sampling.AdaptiveMetropolisSampler attribute)
(pypesto.sampling.AdaptiveParallelTemperingSampler attribute)
(pypesto.sampling.InternalSampler attribute)
(pypesto.sampling.McmcPtResult attribute)
(pypesto.sampling.MetropolisSampler attribute)
(pypesto.sampling.ParallelTemperingSampler attribute)
(pypesto.sampling.Sampler attribute)
(pypesto.visualize.ReferencePoint attribute)
A
AdaptiveMetropolisSampler (class in pypesto.sampling)
AdaptiveParallelTemperingSampler (class in pypesto.sampling)
add_profile() (pypesto.result.ProfileResult method)
adjust_betas() (pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
aggregate_fun() (pypesto.objective.AggregatedObjective method)
aggregate_fun_sensi_orders() (pypesto.objective.AggregatedObjective method)
aggregate_grad() (pypesto.objective.AggregatedObjective method)
aggregate_hess() (pypesto.objective.AggregatedObjective method)
aggregate_hessp() (pypesto.objective.AggregatedObjective method)
aggregate_res() (pypesto.objective.AggregatedObjective method)
aggregate_res_sensi_orders() (pypesto.objective.AggregatedObjective method)
aggregate_sres() (pypesto.objective.AggregatedObjective method)
AggregatedObjective (class in pypesto.objective)
AmiciCalculator (class in pypesto.objective)
AmiciObjectBuilder (class in pypesto.objective)
AmiciObjective (class in pypesto.objective)
append() (pypesto.problem.List method)
(pypesto.result.OptimizeResult method)
append_profile_point() (pypesto.profile.ProfilerResult method)
apply_steadystate_guess() (pypesto.objective.AmiciObjective method)
as_dataframe() (pypesto.result.OptimizeResult method)
as_list() (pypesto.result.OptimizeResult method)
assert_instance() (pypesto.objective.HistoryOptions static method)
(pypesto.optimize.OptimizeOptions static method)
assign_clustered_colors() (in module pypesto.visualize)
assign_clusters() (in module pypesto.visualize)
assign_colors() (in module pypesto.visualize)
assign_startpoints() (in module pypesto.startpoint)
auto_color (pypesto.visualize.ReferencePoint attribute)
C
check_grad() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
check_sensi_orders() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
clear() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.problem.List method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
color (pypesto.visualize.ReferencePoint attribute)
compile_model() (pypesto.petab.PetabImporter method)
copy() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.problem.List method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
count() (pypesto.problem.List method)
(pypesto.result.Sequence method)
create_edatas() (pypesto.objective.AmiciObjectBuilder method)
(pypesto.petab.PetabImporter method)
create_history() (pypesto.objective.HistoryOptions method)
create_instance() (pypesto.profile.ProfileOptions static method)
create_model() (pypesto.objective.AmiciObjectBuilder method)
(pypesto.petab.PetabImporter method)
create_new_profile() (pypesto.result.ProfileResult method)
create_new_profile_list() (pypesto.result.ProfileResult method)
create_objective() (pypesto.petab.PetabImporter method)
create_problem() (pypesto.petab.PetabImporter method)
create_references() (in module pypesto.visualize)
create_solver() (pypesto.objective.AmiciObjectBuilder method)
(pypesto.petab.PetabImporter method)
CsvHistory (class in pypesto.objective)
D
default_options() (pypesto.sampling.AdaptiveMetropolisSampler class method)
(pypesto.sampling.AdaptiveParallelTemperingSampler class method)
(pypesto.sampling.InternalSampler class method)
(pypesto.sampling.MetropolisSampler class method)
(pypesto.sampling.ParallelTemperingSampler class method)
(pypesto.sampling.Sampler class method)
delete_nan_inf() (in module pypesto.visualize)
dim (pypesto.problem.Problem attribute)
DlibOptimizer (class in pypesto.optimize)
E
Engine (class in pypesto.engine)
execute() (pypesto.engine.Engine method)
(pypesto.engine.MultiProcessEngine method)
(pypesto.engine.MultiThreadEngine method)
(pypesto.engine.OptimizerTask method)
(pypesto.engine.SingleCoreEngine method)
exitflag (pypesto.optimize.OptimizerResult attribute)
exitflag_path (pypesto.profile.ProfilerResult attribute)
extend() (pypesto.problem.List method)
F
finalize() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
fix_parameters() (pypesto.problem.Problem method)
flip_profile() (pypesto.profile.ProfilerResult method)
from_yaml() (pypesto.petab.PetabImporter static method)
fromkeys() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
fval (pypesto.optimize.OptimizerResult attribute)
(pypesto.visualize.ReferencePoint attribute)
fval0 (pypesto.optimize.OptimizerResult attribute)
fval_path (pypesto.profile.ProfilerResult attribute)
G
get() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
get_bound_fun() (pypesto.objective.AmiciObjective method)
get_bound_res() (pypesto.objective.AmiciObjective method)
get_chi2_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_current_profile() (pypesto.result.ProfileResult method)
get_default_options() (pypesto.optimize.DlibOptimizer static method)
(pypesto.optimize.Optimizer static method)
(pypesto.optimize.PyswarmOptimizer static method)
(pypesto.optimize.ScipyOptimizer static method)
get_for_key() (pypesto.result.OptimizeResult method)
get_full_matrix() (pypesto.problem.Problem method)
get_full_vector() (pypesto.problem.Problem method)
get_fval() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
get_fval_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_grad() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
get_grad_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_hess() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
get_hess_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_last_sample() (pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.MetropolisSampler method)
get_reduced_matrix() (pypesto.problem.Problem method)
get_reduced_vector() (pypesto.problem.Problem method)
get_res() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
get_res_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_samples() (pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
get_schi2_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_sres() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
get_sres_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_time_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
get_x_trace() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
grad (pypesto.optimize.OptimizerResult attribute)
gradnorm_path (pypesto.profile.ProfilerResult attribute)
H
has_fun (pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.Objective attribute)
(pypesto.problem.Objective attribute)
has_grad (pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.Objective attribute)
(pypesto.problem.Objective attribute)
has_hess (pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.Objective attribute)
(pypesto.problem.Objective attribute)
has_hessp (pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.Objective attribute)
(pypesto.problem.Objective attribute)
has_res (pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.Objective attribute)
(pypesto.problem.Objective attribute)
has_sres (pypesto.objective.AggregatedObjective attribute)
(pypesto.objective.AmiciObjective attribute)
(pypesto.objective.Objective attribute)
(pypesto.problem.Objective attribute)
Hdf5History (class in pypesto.objective)
hess (pypesto.optimize.OptimizerResult attribute)
History (class in pypesto.objective)
history (pypesto.objective.Objective attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.problem.Objective attribute)
HistoryBase (class in pypesto.objective)
HistoryOptions (class in pypesto.objective)
I
id (pypesto.optimize.OptimizerResult attribute)
index() (pypesto.problem.List method)
(pypesto.result.Sequence method)
initialize() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciCalculator method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
insert() (pypesto.problem.List method)
InternalSampler (class in pypesto.sampling)
is_least_squares() (pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
items() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
Iterable (class in pypesto.problem)
K
keys() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
L
latin_hypercube() (in module pypesto.startpoint)
legend (pypesto.visualize.ReferencePoint attribute)
List (class in pypesto.problem)
log_to_console() (in module pypesto.logging)
log_to_file() (in module pypesto.logging)
M
McmcPtResult (class in pypesto.sampling)
MemoryHistory (class in pypesto.objective)
message (pypesto.optimize.OptimizerResult attribute)
(pypesto.profile.ProfilerResult attribute)
MetropolisSampler (class in pypesto.sampling)
minimize() (in module pypesto.optimize)
(pypesto.optimize.DlibOptimizer method)
(pypesto.optimize.Optimizer method)
(pypesto.optimize.PyswarmOptimizer method)
(pypesto.optimize.ScipyOptimizer method)
MODEL_BASE_DIR (pypesto.petab.PetabImporter attribute)
MultiProcessEngine (class in pypesto.engine)
MultiThreadEngine (class in pypesto.engine)
N
n_fval (pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.profile.ProfilerResult attribute)
n_grad (pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.profile.ProfilerResult attribute)
n_hess (pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.OptimizerResult attribute)
(pypesto.profile.ProfilerResult attribute)
n_res (pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.OptimizerResult attribute)
n_sres (pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.OptimizerHistory attribute)
(pypesto.optimize.OptimizerResult attribute)
normalize_input() (pypesto.problem.Problem method)
O
Objective (class in pypesto.objective)
(class in pypesto.problem)
optimize_result (pypesto.result.Result attribute)
OptimizeOptions (class in pypesto.optimize)
Optimizer (class in pypesto.optimize)
optimizer_history() (in module pypesto.visualize)
optimizer_history_lowlevel() (in module pypesto.visualize)
OptimizeResult (class in pypesto.result)
OptimizerHistory (class in pypesto.objective)
OptimizerResult (class in pypesto.optimize)
OptimizerTask (class in pypesto.engine)
output_to_dict() (pypesto.objective.AggregatedObjective static method)
(pypesto.objective.AmiciObjective static method)
(pypesto.objective.Objective static method)
(pypesto.problem.Objective static method)
output_to_tuple() (pypesto.objective.AggregatedObjective static method)
(pypesto.objective.AmiciObjective static method)
(pypesto.objective.Objective static method)
(pypesto.problem.Objective static method)
P
par_arr_to_dct() (pypesto.objective.AmiciObjective method)
ParallelTemperingSampler (class in pypesto.sampling)
parameter_profile() (in module pypesto.profile)
parameters() (in module pypesto.visualize)
parameters_lowlevel() (in module pypesto.visualize)
PetabImporter (class in pypesto.petab)
pop() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.problem.List method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
popitem() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
pre_post_processor (pypesto.objective.Objective attribute)
(pypesto.problem.Objective attribute)
print_parameter_summary() (pypesto.problem.Problem method)
Problem (class in pypesto.problem)
problem (pypesto.result.Result attribute)
process_offset_y() (in module pypesto.visualize)
process_result_list() (in module pypesto.visualize)
process_y_limits() (in module pypesto.visualize)
profile_lowlevel() (in module pypesto.visualize)
profile_result (pypesto.result.Result attribute)
ProfileOptions (class in pypesto.profile)
ProfileResult (class in pypesto.result)
ProfilerResult (class in pypesto.profile)
profiles() (in module pypesto.visualize)
profiles_lowlevel() (in module pypesto.visualize)
pypesto.engine (module)
pypesto.logging (module)
pypesto.objective (module)
pypesto.optimize (module)
pypesto.petab (module)
pypesto.problem (module)
pypesto.profile (module)
pypesto.result (module)
pypesto.sampling (module)
pypesto.startpoint (module)
pypesto.visualize (module)
PyswarmOptimizer (class in pypesto.optimize)
R
ratio_path (pypesto.profile.ProfilerResult attribute)
rdatas_to_measurement_df() (pypesto.petab.PetabImporter method)
rdatas_to_simulation_df() (pypesto.petab.PetabImporter method)
rebind_fun() (pypesto.objective.AmiciObjective method)
rebind_res() (pypesto.objective.AmiciObjective method)
ReferencePoint (class in pypesto.visualize)
remove() (pypesto.problem.List method)
res (pypesto.optimize.OptimizerResult attribute)
res_to_chi2() (in module pypesto.objective)
reset_steadystate_guesses() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
Result (class in pypesto.result)
reverse() (pypesto.problem.List method)
S
sample() (in module pypesto.sampling)
(pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.MetropolisSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
(pypesto.sampling.Sampler method)
sample_result (pypesto.result.Result attribute)
Sampler (class in pypesto.sampling)
SampleResult (class in pypesto.result)
sampling_1d_marginals() (in module pypesto.visualize)
sampling_fval_trace() (in module pypesto.visualize)
sampling_parameters_trace() (in module pypesto.visualize)
sampling_scatter() (in module pypesto.visualize)
ScipyOptimizer (class in pypesto.optimize)
Sequence (class in pypesto.result)
set_last_sample() (pypesto.sampling.AdaptiveMetropolisSampler method)
(pypesto.sampling.InternalSampler method)
(pypesto.sampling.MetropolisSampler method)
setdefault() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
SingleCoreEngine (class in pypesto.engine)
sort() (pypesto.problem.List method)
(pypesto.result.OptimizeResult method)
sres (pypesto.optimize.OptimizerResult attribute)
sres_to_schi2() (in module pypesto.objective)
start_time (pypesto.objective.CsvHistory attribute)
(pypesto.objective.Hdf5History attribute)
(pypesto.objective.History attribute)
(pypesto.objective.HistoryBase attribute)
(pypesto.objective.MemoryHistory attribute)
(pypesto.objective.OptimizerHistory attribute)
store_steadystate_guess() (pypesto.objective.AmiciObjective method)
swap_samples() (pypesto.sampling.AdaptiveParallelTemperingSampler method)
(pypesto.sampling.ParallelTemperingSampler method)
T
time (pypesto.optimize.OptimizerResult attribute)
time_path (pypesto.profile.ProfilerResult attribute)
time_total (pypesto.profile.ProfilerResult attribute)
translate_options() (pypesto.sampling.AdaptiveMetropolisSampler class method)
(pypesto.sampling.AdaptiveParallelTemperingSampler class method)
(pypesto.sampling.InternalSampler class method)
(pypesto.sampling.MetropolisSampler class method)
(pypesto.sampling.ParallelTemperingSampler class method)
(pypesto.sampling.Sampler class method)
U
unfix_parameters() (pypesto.problem.Problem method)
uniform() (in module pypesto.startpoint)
update() (pypesto.objective.CsvHistory method)
(pypesto.objective.Hdf5History method)
(pypesto.objective.History method)
(pypesto.objective.HistoryBase method)
(pypesto.objective.HistoryOptions method)
(pypesto.objective.MemoryHistory method)
(pypesto.objective.OptimizerHistory method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
update_from_problem() (pypesto.objective.AggregatedObjective method)
(pypesto.objective.AmiciObjective method)
(pypesto.objective.Objective method)
(pypesto.problem.Objective method)
V
values() (pypesto.objective.HistoryOptions method)
(pypesto.optimize.OptimizeOptions method)
(pypesto.optimize.OptimizerResult method)
(pypesto.profile.ProfileOptions method)
(pypesto.profile.ProfilerResult method)
(pypesto.sampling.McmcPtResult method)
(pypesto.visualize.ReferencePoint method)
W
waterfall() (in module pypesto.visualize)
waterfall_lowlevel() (in module pypesto.visualize)
X
x (pypesto.optimize.OptimizerResult attribute)
(pypesto.visualize.ReferencePoint attribute)
x0 (pypesto.optimize.OptimizerResult attribute)
x_free_indices (pypesto.problem.Problem attribute)
x_path (pypesto.profile.ProfilerResult attribute)
Read the Docs
v: v0.0.13
Versions
latest
stable
develop
v0.0.13
v0.0.12
v0.0.11
v0.0.10
v0.0.9
v0.0.8
v0.0.7
v0.0.6
v0.0.5
v0.0.4
v0.0.3
v0.0.2
v0.0.1
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.